Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_3095661_3102983_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3095661 - 3102983

Intron Length:

7323

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCG|GTGAGTGCG

5'SS Class:

strong_major

3'SS Sequence:

TTCTGCTCTGTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CATTGAC

U12 Branch Point Sequence:

GGACCATTGACT

Flanking Amino Acid:

PFYNDFERGAVDSYDVTVEE

Intron Amino Acid Position:

175

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.5

0.72

66.2

39.6

Major BPS

66.4

0.41

58.7

38.1

Major PPT

78.6

0.64

0.8

73.7

31.4

Minor 5ss

-2.5

33.4

41.6

Minor BPS

54.8

0.23

1.7

69.03

40.9

Associated Gene:

Gene:

ALOX5

Ensembl Gene ID:

ENSAPLG00000003338

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045782

3095139 - 3125391

30253

ENSAPLT00000003461

3095139 - 3131302

36164