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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_30987932_30993883_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
30987932 - 30993883
Intron Length:
5952

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCTTC
5'SS Class:
weak_major
3'SS Sequence:
TGTCCTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
ATTTACGTAAAT
Flanking Amino Acid:
EFKKTQGKKQMQEKAKEIYM
Intron Amino Acid Position:
86

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.77
0.9
74.9
36.3
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
85.7
0.8
0.8
80.4
31.6
Minor 5ss
65.8
0.53
2.2
76
40.1
Minor BPS
54.4
0.22
2.3
81
40.1

Associated Gene:

Gene:
RGS10
Ensembl Gene ID:
ENSAPLG00000009045
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009416
30985071 - 30999054
13984