About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_30993971_30995426_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
30993971 - 30995426
Intron Length:
1456

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTTGCTATA
5'SS Class:
weak_major
3'SS Sequence:
TTCTTTTCCCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTTAA
U12 Branch Point Sequence:
TCTTTGTTAACT
Flanking Amino Acid:
EDPEGVKRFREFLKKEFSEE
Intron Amino Acid Position:
57

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
53.5
0.08
1.4
61
45.3
Major BPS
72.1
0.55
1.2
63.7
43.9
Major PPT
82.5
0.73
0.7
77.1
31.6
Minor 5ss
39.4
-1.2
2.9
43.5
43.9
Minor BPS
68.7
0.67
2
86.99
39.2

Associated Gene:

Gene:
RGS10
Ensembl Gene ID:
ENSAPLG00000009045
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009416
30985071 - 30999054
13984