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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_30995546_30999005_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30995546 - 30999005
Intron Length:
3460

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCGGGG
5'SS Class:
major
3'SS Sequence:
TCAATTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
CTCTCCTCAATT
Flanking Amino Acid:
SRLSRKRPPSEINDSEGHPS
Intron Amino Acid Position:
17

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.7
0.32
1.3
49.8
46.9
Major BPS
84.4
0.85
1
84
34.5
Major PPT
81
0.7
0.9
72.8
41.9
Minor 5ss
33.1
-1.9
3.7
46.9
48.5
Minor BPS
68.6
0.66
1.6
79.83
42.7

Associated Gene:

Gene:
RGS10
Ensembl Gene ID:
ENSAPLG00000009045
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009416
30985071 - 30999054
13984