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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_31011106_31011984_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
31011106 - 31011984
Intron Length:
879

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTGAGTAAT
5'SS Class:
major
3'SS Sequence:
GTTCCTTTTTAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTTTCTTTTATT
Flanking Amino Acid:
QAWNQQGFGVDQSPSAAWMG
Intron Amino Acid Position:
312

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
76.8
33.7
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
75.2
0.57
1
79
33.3
Minor 5ss
33.2
-1.9
2.8
38.8
40.3
Minor BPS
75.6
0.89
1.5
91.64
31.3

Associated Gene:

Gene:
TIAL1
Ensembl Gene ID:
ENSAPLG00000009088
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009511
31010988 - 31021864
10877