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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_31012744_31013022_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
31012744 - 31013022
Intron Length:
279

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCACA
5'SS Class:
strong_major
3'SS Sequence:
TTACATTCTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTGTTTTTACAT
Flanking Amino Acid:
VFPEKGYSFVRFSTHESAAH
Intron Amino Acid Position:
224

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1
73.3
37.4
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
76.3
0.59
0.8
74.3
36
Minor 5ss
45.8
-0.4
2.5
58.4
45.9
Minor BPS
58
0.33
1.7
76.07
41.1

Associated Gene:

Gene:
TIAL1
Ensembl Gene ID:
ENSAPLG00000009088
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009511
31010988 - 31021864
10877