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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_31013108_31013193_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
31013108 - 31013193
Intron Length:
86

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGATTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTGTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TAATTCAGAAAT
Flanking Amino Acid:
YCGGIASGLTDQLMRQTFSP
Intron Amino Acid Position:
196

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
81.8
32.8
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
77.6
0.62
0.9
72.8
37.5
Minor 5ss
42.8
-0.8
3.4
64.9
46.4
Minor BPS
48.9
-0
1.8
69.61
40.2

Associated Gene:

Gene:
TIAL1
Ensembl Gene ID:
ENSAPLG00000009088
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009511
31010988 - 31021864
10877