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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_31013290_31013582_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
31013290 - 31013582
Intron Length:
293

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGAGCT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCTTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTAAAA
U12 Branch Point Sequence:
TGATGCTTAAAA
Flanking Amino Acid:
KPPAPKSTQENNTKQLRFED
Intron Amino Acid Position:
164

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
0.9
75.3
32.6
Major BPS
60.8
0.27
1.1
68.9
33
Major PPT
84.7
0.78
0.7
80.7
24.5
Minor 5ss
34.8
-1.7
3.5
49.1
41
Minor BPS
60.4
0.32
1.9
70.67
40.9

Associated Gene:

Gene:
TIAL1
Ensembl Gene ID:
ENSAPLG00000009088
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009511
31010988 - 31021864
10877