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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_31013692_31015924_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
31013692 - 31015924
Intron Length:
2233

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTCCTCCCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TAGTCTTTATTT
Flanking Amino Acid:
YGFVSFYNKLDAENAIVHMG
Intron Amino Acid Position:
128

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.8
84.9
26.3
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
79.7
0.67
0.7
78
24
Minor 5ss
32.1
-2
2.8
39.2
40.5
Minor BPS
64.4
0.53
1.6
76.62
40.7

Associated Gene:

Gene:
TIAL1
Ensembl Gene ID:
ENSAPLG00000009088
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009511
31010988 - 31021864
10877