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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_31016001_31017874_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
31016001 - 31017874
Intron Length:
1874

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATC|GTAAGTATC
5'SS Class:
major
3'SS Sequence:
CTTCTTTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
CTTCTTTTCACA
Flanking Amino Acid:
KSAFAPFGKISDARVVKDMA
Intron Amino Acid Position:
102

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1.3
77.9
36.8
Major BPS
84.4
0.85
1
84
34.5
Major PPT
87.1
0.83
0.7
82.8
25.8
Minor 5ss
41.8
-0.9
2.8
55.5
35.9
Minor BPS
54.9
0.15
1.8
67.58
39.4

Associated Gene:

Gene:
TIAL1
Ensembl Gene ID:
ENSAPLG00000009088
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009511
31010988 - 31021864
10877