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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_31018331_31018626_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
31018331 - 31018626
Intron Length:
296

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TACTTATTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
GTTTTATTAATT
Flanking Amino Acid:
AMNGRKILGKEVKVNWATTP
Intron Amino Acid Position:
55

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.5
1.1
0.7
87.9
29.3
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
83.9
0.76
0.8
81.3
34.9
Minor 5ss
41.9
-0.9
2.9
58.7
45.8
Minor BPS
71
0.74
1.5
85.63
34.2

Associated Gene:

Gene:
TIAL1
Ensembl Gene ID:
ENSAPLG00000009088
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009511
31010988 - 31021864
10877