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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_31042362_31052636_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
31042362 - 31052636
Intron Length:
10275

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGCGG
5'SS Class:
major
3'SS Sequence:
TCTTAACTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
ATGTTCTTAACT
Flanking Amino Acid:
DPRRRGEAAKDGQSSANGPS
Intron Amino Acid Position:
59

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.1
55.2
49
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
75.8
0.58
0.9
67
39.2
Minor 5ss
28.8
-2.4
3.4
38.1
46.9
Minor BPS
83
1.11
1
89.94
34.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029441
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046380
31042188 - 31054136
11949