About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_31131771_31132073_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
31131771 - 31132073
Intron Length:
303

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTTAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TGTTTTTTAAAC
Flanking Amino Acid:
EKTDLSLWRKVDDRFFWNKH
Intron Amino Acid Position:
37

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.8
88.1
25.2
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
77.1
0.61
1
74.1
39.5
Minor 5ss
40.3
-1.1
3.4
58.5
40.4
Minor BPS
70.5
0.62
1.3
75.89
33.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021626
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022267
31131370 - 31135388
4019