About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_31133361_31134097_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
31133361 - 31134097
Intron Length:
737

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTCTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TGATCGTTATTC
Flanking Amino Acid:
LISRRSRHRAGMRYKRRGVD
Intron Amino Acid Position:
122

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
76.6
33.6
Major BPS
80
0.75
1
78.6
31
Major PPT
79.9
0.67
0.8
73.8
36.9
Minor 5ss
31.7
-2.1
3.1
36.4
42
Minor BPS
48.9
-0.1
2.3
63.84
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021626
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022267
31131370 - 31135388
4019