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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_31140740_31140831_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
31140740 - 31140831
Intron Length:
92

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTA|GTAAGTTTC
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAA
U12 Branch Point Sequence:
AAGTGTTAAACT
Flanking Amino Acid:
LLSNSAYYVAYYDDEIDKVN
Intron Amino Acid Position:
41

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
77.7
31.2
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
94
0.99
0.5
88.9
28.2
Minor 5ss
46.6
-0.3
2.7
63.3
36.2
Minor BPS
48.8
-0
2.1
66.88
44.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021679
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032000
31140618 - 31142672
2055