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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_31148177_31148439_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
31148177 - 31148439
Intron Length:
263

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TCTGTTCACCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
AAGCTCTTAATT
Flanking Amino Acid:
DDLHRTLLVARFLSLSAGQT
Intron Amino Acid Position:
593

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
1
72.2
39.5
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
69.3
0.44
0.9
62.5
38.8
Minor 5ss
29.2
-2.4
2.9
36.2
40.8
Minor BPS
66.3
0.59
1.2
72.71
38.2

Associated Gene:

Gene:
MCMBP
Ensembl Gene ID:
ENSAPLG00000009939
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010397
31147801 - 31163639
15839