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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_31148529_31148913_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
31148529 - 31148913
Intron Length:
385

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGAAG
5'SS Class:
strong_major
3'SS Sequence:
GTGTTGTTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CAGTTAT
U12 Branch Point Sequence:
CTTTTTGCCACT
Flanking Amino Acid:
DYSISDEVTKAVEEDFVEMR
Intron Amino Acid Position:
564

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
71.3
40.1
Major BPS
61.2
0.28
1.2
53
42.8
Major PPT
75
0.56
0.9
69.5
41.6
Minor 5ss
37.7
-1.4
3.1
47.3
48.3
Minor BPS
42.4
-0.5
2.4
66.64
44.9

Associated Gene:

Gene:
MCMBP
Ensembl Gene ID:
ENSAPLG00000009939
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010397
31147801 - 31163639
15839