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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_31149079_31149650_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
31149079 - 31149650
Intron Length:
572

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTATGGCGA
5'SS Class:
major
3'SS Sequence:
TTTTATTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
GTGATTTTATTT
Flanking Amino Acid:
ITSEGRSLLPSDCQVHLQPQ
Intron Amino Acid Position:
509

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.9
0.47
1.1
53.6
44.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
93.8
0.99
0.6
92.5
25.7
Minor 5ss
36.7
-1.5
3.3
47.3
48.2
Minor BPS
49.6
0.05
1.6
64.37
40.9

Associated Gene:

Gene:
MCMBP
Ensembl Gene ID:
ENSAPLG00000009939
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010397
31147801 - 31163639
15839