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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_31149785_31150754_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
31149785 - 31150754
Intron Length:
970

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGAGTGT
5'SS Class:
major
3'SS Sequence:
CTTGCTTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTTAC
U12 Branch Point Sequence:
TGACACTTACGA
Flanking Amino Acid:
QLEQGQLDTTGVHNVKALGN
Intron Amino Acid Position:
464

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.9
0.49
1.1
63.7
43.1
Major BPS
61.4
0.28
1
53
33.7
Major PPT
81.4
0.71
0.8
76.8
31.9
Minor 5ss
36.4
-1.5
3.7
55.4
48.8
Minor BPS
45.1
-0.3
2
55.7
42.6

Associated Gene:

Gene:
MCMBP
Ensembl Gene ID:
ENSAPLG00000009939
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010397
31147801 - 31163639
15839