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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_31150921_31151473_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
31150921 - 31151473
Intron Length:
553

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGAACA
5'SS Class:
major
3'SS Sequence:
TTTCCCGTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTGAT
U12 Branch Point Sequence:
TTTCCCGTTACA
Flanking Amino Acid:
YRIIQQLVPASYRLQMTIEN
Intron Amino Acid Position:
409

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.54
1
68.4
36.4
Major BPS
71.2
0.53
1
61
37.5
Major PPT
82.5
0.73
0.8
76.1
32.5
Minor 5ss
36
-1.6
2.9
47.7
41.5
Minor BPS
55.6
0.17
2.3
77.2
39.4

Associated Gene:

Gene:
MCMBP
Ensembl Gene ID:
ENSAPLG00000009939
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010397
31147801 - 31163639
15839