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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_31151592_31153393_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
31151592 - 31153393
Intron Length:
1802

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTAAGTGTT
5'SS Class:
major
3'SS Sequence:
GCTTTTGGTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCAGAT
U12 Branch Point Sequence:
CTTGCCTAACCT
Flanking Amino Acid:
EYLILHLISTVYARRDVLPL
Intron Amino Acid Position:
369

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1.1
78.2
36.4
Major BPS
65.3
0.38
1
60.7
37.6
Major PPT
70.6
0.46
1
69.2
41.8
Minor 5ss
40.6
-1
3.4
59
45.5
Minor BPS
52.4
0.15
2.1
75
47.8

Associated Gene:

Gene:
MCMBP
Ensembl Gene ID:
ENSAPLG00000009939
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010397
31147801 - 31163639
15839