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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_31153518_31154142_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
31153518 - 31154142
Intron Length:
625

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTGAGTATC
5'SS Class:
major
3'SS Sequence:
GCTCTTTTAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
GCTCTTTTAACA
Flanking Amino Acid:
ACLNEEESKTFVSNFMSELS
Intron Amino Acid Position:
328

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1.1
74.7
35.4
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
76.9
0.61
0.9
72.6
36.4
Minor 5ss
37.8
-1.4
3
55.7
41.6
Minor BPS
66.6
0.52
1.2
68.82
37.6

Associated Gene:

Gene:
MCMBP
Ensembl Gene ID:
ENSAPLG00000009939
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010397
31147801 - 31163639
15839