Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_31156189_31156638_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

31156189 - 31156638

Intron Length:

450

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGAATAA

5'SS Class:

major

3'SS Sequence:

CTCTCTGTGGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATGAAA

U12 Branch Point Sequence:

CCAGACAAAACT

Flanking Amino Acid:

GEKGPACLVKVYESWDSYKV

Intron Amino Acid Position:

238

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.8

0.54

1.1

67.2

34.4

Major BPS

57.6

0.19

1.3

67.9

36.3

Major PPT

71.4

0.48

68.1

37.5

Minor 5ss

35.2

-1.7

3.4

46.4

48.9

Minor BPS

-0.6

2.1

54.2

46.9

Associated Gene:

Gene:

MCMBP

Ensembl Gene ID:

ENSAPLG00000009939

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010397

31147801 - 31163639

15839