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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_31156791_31158282_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
31156791 - 31158282
Intron Length:
1492

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAATACTC
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTAAA
U12 Branch Point Sequence:
TTCTGTTTAAAG
Flanking Amino Acid:
HPSKQKEQHIGSGGDIHGCG
Intron Amino Acid Position:
187

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
71.8
38.2
Major BPS
72.6
0.56
1.2
75.9
36.3
Major PPT
89.9
0.9
0.7
88
29.4
Minor 5ss
36.6
-1.5
3.2
51.3
45.2
Minor BPS
55.7
0.04
2
63.96
44.2

Associated Gene:

Gene:
MCMBP
Ensembl Gene ID:
ENSAPLG00000009939
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010397
31147801 - 31163639
15839