About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_31158413_31159789_R

Intron Information:

Intron Rank:
5
Intron Class:
minor
Intron Phase:
0
Intron Coordinates:
31158413 - 31159789
Intron Length:
1377

Sequence Information:

Terminal Dinucleotides:
AT-AC
5'SS Sequence:
GAA|ATATCTTTT
5'SS Class:
strong_minor
3'SS Sequence:
TCCTCAATCTTAC|G
3'SS Class:
strong_BPS
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TTGTCCTTAATC
Flanking Amino Acid:
VPGESAWVKEAYISASQARV
Intron Amino Acid Position:
144

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
37.1
-0.8
3.5
65.1
41.6
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
39.7
-0.5
3.1
58.9
35.9
Minor 5ss
83.5
1.12
1.7
92.6
19.8
Minor BPS
86
1.11
1
86.22
31.9

Associated Gene:

Gene:
MCMBP
Ensembl Gene ID:
ENSAPLG00000009939
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010397
31147801 - 31163639
15839