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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_31160884_31162767_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
31160884 - 31162767
Intron Length:
1884

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGGATC
5'SS Class:
strong_major
3'SS Sequence:
CTCTGTTTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAGAC
U12 Branch Point Sequence:
TTGTTTAGACCA
Flanking Amino Acid:
KLKENNATNWVPSLNDVPVH
Intron Amino Acid Position:
49

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1
76.9
38.6
Major BPS
69.3
0.48
1.1
66.7
40
Major PPT
80.6
0.69
0.8
75.5
33.1
Minor 5ss
36.4
-1.5
3.3
43.8
43.8
Minor BPS
45.1
-0.3
1.9
60.22
40.1

Associated Gene:

Gene:
MCMBP
Ensembl Gene ID:
ENSAPLG00000009939
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010397
31147801 - 31163639
15839