About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_31162854_31163581_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
31162854 - 31163581
Intron Length:
728

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGCGCG
5'SS Class:
major
3'SS Sequence:
TCTTGTTTTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTAAA
U12 Branch Point Sequence:
GCTCATGTAAAT
Flanking Amino Acid:
NPFSIVQGIFAQNLPNSDWE
Intron Amino Acid Position:
20

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1
57.1
42.2
Major BPS
66.4
0.41
1.1
67.7
36.5
Major PPT
84.7
0.78
0.7
80.6
31.5
Minor 5ss
31.7
-2.1
3.3
39.7
45.8
Minor BPS
43.3
-0.4
2.1
60.29
42.9

Associated Gene:

Gene:
MCMBP
Ensembl Gene ID:
ENSAPLG00000009939
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010397
31147801 - 31163639
15839