Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_31166649_31169124_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

31166649 - 31169124

Intron Length:

2476

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTT|GTGCTTAGT

5'SS Class:

weak_major

3'SS Sequence:

TGTTCTGCTGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCTTCAG

U12 Branch Point Sequence:

GGTCCCAGCACC

Flanking Amino Acid:

LDLGSLNQYEPVQPHW

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

53.2

0.08

1.1

56.5

41.9

Major BPS

51.1

0.03

1.6

43.2

Major PPT

79.4

0.66

0.9

73.5

Minor 5ss

33.6

-1.9

3.1

47.6

42.5

Minor BPS

43.6

-0.5

2.1

56.02

41.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000025076

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035164

31166631 - 31170464

3834