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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_31169243_31169756_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
31169243 - 31169756
Intron Length:
514

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTTAG
5'SS Class:
strong_major
3'SS Sequence:
TTGTGTGTCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAC
U12 Branch Point Sequence:
AGGATTGTAACT
Flanking Amino Acid:
SAKLEEVYNSVQPDPESVVL
Intron Amino Acid Position:
295

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
76.7
34.9
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
74.2
0.54
1
68.1
42.3
Minor 5ss
39.7
-1.2
2.8
46.1
43.6
Minor BPS
47.2
-0.1
2
62.97
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025076
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025961
31163967 - 31171856
7890