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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_31169951_31170299_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
31169951 - 31170299
Intron Length:
349

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTGTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTCATGTCACT
Flanking Amino Acid:
YTEDFSDKLEAEYKRAVTTN
Intron Amino Acid Position:
360

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
1.1
83
36.1
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
89
0.88
0.8
84.5
30.4
Minor 5ss
35.7
-1.6
2.6
42.8
44.1
Minor BPS
45.2
-0.3
2.5
73.99
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025076
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035164
31166631 - 31170464
3834
ENSAPLT00000025961
31163967 - 31171856
7890