Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_31171435_31171746_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

31171435 - 31171746

Intron Length:

312

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTATGTGCT

5'SS Class:

strong_major

3'SS Sequence:

CCTCTTTTTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTGAA

U12 Branch Point Sequence:

GCATTCTGAATT

Flanking Amino Acid:

IDDDHDDIPDGEMAQIDHLV

Intron Amino Acid Position:

423

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.6

0.72

0.9

73.2

35.6

Major BPS

82.1

0.8

71.6

36.4

Major PPT

87.1

0.83

0.7

79.6

32.4

Minor 5ss

41.6

-0.9

3.1

55.7

43.9

Minor BPS

60.4

0.4

1.4

70.06

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000025076

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025961

31163967 - 31171856

7890