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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_31176516_31176989_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
31176516 - 31176989
Intron Length:
474

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTGAGTAAG
5'SS Class:
major
3'SS Sequence:
TGTTTCTTAACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
TGTTTCTTAACA
Flanking Amino Acid:
CKGFFNIYHPLDPVAYRLEP
Intron Amino Acid Position:
30

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1
68.1
38.6
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
81.4
0.71
0.9
77.5
35.6
Minor 5ss
31.8
-2.1
2.7
39
40.2
Minor BPS
85.7
1.12
0.9
87.92
29.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018439
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020833
31176429 - 31181770
5342