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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_3118381_3120668_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3118381 - 3120668
Intron Length:
2288

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGTAC
5'SS Class:
strong_major
3'SS Sequence:
CTCTGTCATTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTCAT
U12 Branch Point Sequence:
TTCTCTGTCATT
Flanking Amino Acid:
MYGMRGVKAAGFPKMIKTRE
Intron Amino Acid Position:
649

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
71.9
34
Major BPS
72.5
0.56
1.2
75
39.9
Major PPT
76
0.58
0.9
73.3
36.2
Minor 5ss
37.1
-1.5
3.3
49.8
46.8
Minor BPS
48.6
-0
2.4
74.65
43.4

Associated Gene:

Gene:
ALOX5
Ensembl Gene ID:
ENSAPLG00000003338
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045782
3095139 - 3125391
30253
ENSAPLT00000003461
3095139 - 3131302
36164