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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_31211442_31212602_R

Intron Information:

Intron Rank:
140019
Intron Class:
major
Intron Phase:
Intron Coordinates:
31211442 - 31212602
Intron Length:
1161

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTATCTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
TTTCTTTTATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.4
1
0.8
84.2
26.4
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
90.7
0.92
0.7
88.8
28
Minor 5ss
33.8
-1.8
2.9
42.8
44.4
Minor BPS
67
0.61
1.5
84.71
35.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022723
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021492
31210558 - 31213611
3054