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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_31217476_31275945_F

Intron Information:

Intron Rank:
133118
Intron Class:
major
Intron Phase:
Intron Coordinates:
31217476 - 31275945
Intron Length:
58470

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
GCTCTGGTTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAGACAA
U12 Branch Point Sequence:
AATGCCGCATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
1
86.4
29.2
Major BPS
46.8
-0.2
1
50.7
34.3
Major PPT
68.8
0.42
1
65.1
41.2
Minor 5ss
35
-1.7
3.3
50
46.3
Minor BPS
41
-0.6
2.3
59.52
44.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021582
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018454
31217390 - 31295299
77910