Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_31276023_31295103_F

Intron Information:

Intron Rank:

133119

Intron Class:

major

Intron Phase:

Intron Coordinates:

31276023 - 31295103

Intron Length:

19081

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAT|GTGAGTATG

5'SS Class:

strong_major

3'SS Sequence:

TGTGTTCTTGTAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTCCT

U12 Branch Point Sequence:

TTTTTTTTTCCT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.2

0.74

79.9

34.9

Major BPS

39.5

-0.6

4.3

85.7

34.9

Major PPT

79.1

0.65

0.9

73.9

36.8

Minor 5ss

36.3

-1.5

2.9

41.7

Minor BPS

45.5

-0.2

3.6

82.93

38.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000021582

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043048

31275633 - 31295636

20004

ENSAPLT00000019681

31275633 - 31299616

23984

ENSAPLT00000018454

31217390 - 31295299

77910