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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_3127790_3131287_F

Intron Information:

Intron Rank:
13
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
3127790 - 3131287
Intron Length:
3498

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAGGTGGT
5'SS Class:
major
3'SS Sequence:
CCTTCCTGACAAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
CTTTGCTGACTT
Flanking Amino Acid:
LPQPVISAKLLPAG*
Intron Amino Acid Position:
742

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
68.8
42.2
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
56.9
0.16
1.1
56.7
37.8
Minor 5ss
33.2
-1.9
3.5
45.9
44.6
Minor BPS
48.6
-0
2.1
72.16
45.3

Associated Gene:

Gene:
ALOX5
Ensembl Gene ID:
ENSAPLG00000003338
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003461
3095139 - 3131302
36164