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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_31298999_31299074_F

Intron Information:

Intron Rank:
133122
Intron Class:
major
Intron Phase:
Intron Coordinates:
31298999 - 31299074
Intron Length:
76

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGAAAC
5'SS Class:
major
3'SS Sequence:
TCATGCGTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
GATTCCTGAGTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1
69.5
34.7
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
72.4
0.5
1
65.2
40.9
Minor 5ss
40
-1.1
2.8
48.8
41.7
Minor BPS
59.2
0.37
1.7
75.43
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021582
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024663
31225566 - 31299616
74051
ENSAPLT00000020285
31216976 - 31299616
82641
ENSAPLT00000019681
31275633 - 31299616
23984
ENSAPLT00000042758
31221130 - 31299616
78487