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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_31324083_31326375_F

Intron Information:

Intron Rank:
132852
Intron Class:
major
Intron Phase:
Intron Coordinates:
31324083 - 31326375
Intron Length:
2293

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATCATT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTCTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATAAAAT
U12 Branch Point Sequence:
TTGGAATAAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
1
83.7
34.8
Major BPS
61.8
0.29
1.1
67.7
34.6
Major PPT
90.4
0.91
0.7
89
28.1
Minor 5ss
45.4
-0.5
2.9
66.6
44.4
Minor BPS
42.9
-0.4
2.1
63.27
46.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021458
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032261
31324042 - 31329836
5795