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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_31328991_31329832_F

Intron Information:

Intron Rank:
132854
Intron Class:
major
Intron Phase:
Intron Coordinates:
31328991 - 31329832
Intron Length:
842

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGATGT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTCTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
GTAATATTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.8
77.6
33.4
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
85.5
0.8
0.7
80.8
31.3
Minor 5ss
34.2
-1.8
3.2
47.6
47.9
Minor BPS
56.5
0.28
1.6
71.53
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021458
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032261
31324042 - 31329836
5795