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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_31337540_31342313_F

Intron Information:

Intron Rank:
132857
Intron Class:
major
Intron Phase:
Intron Coordinates:
31337540 - 31342313
Intron Length:
4774

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTATGTAAT
5'SS Class:
major
3'SS Sequence:
GTTCCTTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAA
U12 Branch Point Sequence:
TAATGTTTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.2
0.5
1
73.7
36.6
Major BPS
72.1
0.55
1.1
63.7
43.9
Major PPT
81.2
0.7
0.8
75.6
32.9
Minor 5ss
45.7
-0.5
2.6
65
40.2
Minor BPS
68
0.64
1.7
81.94
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021458
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038770
31329736 - 31342555
12820