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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_3137346_3151767_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
3137346 - 3151767
Intron Length:
14422

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGGTGCA
5'SS Class:
major
3'SS Sequence:
CTTCTCTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
TGGTCTGCATCT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1
67.7
37.6
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
89
0.88
0.6
84.1
23.9
Minor 5ss
31.7
-2.1
3.3
37.8
42.2
Minor BPS
43.5
-0.4
2.3
64.49
46

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003077
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003161
3137232 - 3160356
23125