About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_31381487_31384685_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
31381487 - 31384685
Intron Length:
3199

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAATGTGT
5'SS Class:
major
3'SS Sequence:
TTCTGTTTTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTGTTGTTCATT
Flanking Amino Acid:
DKTEIKEAFLAVSLALALNG
Intron Amino Acid Position:
86

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
72.3
39.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
84.4
0.77
0.7
80.5
31.5
Minor 5ss
38.5
-1.3
3.4
56.5
47.6
Minor BPS
48.6
-0
2.4
74.52
43.3

Associated Gene:

Gene:
PLPP4
Ensembl Gene ID:
ENSAPLG00000011003
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011454
31355902 - 31413583
57682