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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_31384750_31386276_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
31384750 - 31386276
Intron Length:
1527

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
GTGTTTTTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
ATATTTTTAATG
Flanking Amino Acid:
CTNTIKLIVGRPRPDFFYRC
Intron Amino Acid Position:
107

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.2
1.11
0.7
90.9
28.7
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
81.4
0.71
0.8
77.2
37.1
Minor 5ss
40.2
-1.1
3.1
58.6
45.9
Minor BPS
67.7
0.42
1.2
65.81
36.4

Associated Gene:

Gene:
PLPP4
Ensembl Gene ID:
ENSAPLG00000011003
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011454
31355902 - 31413583
57682