About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_31409686_31413383_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
31409686 - 31413383
Intron Length:
3698

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCCAT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTGTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTAACAT
U12 Branch Point Sequence:
CTTTCTTTGTCT
Flanking Amino Acid:
RMCDYKHHWQDAFVGGIIGL
Intron Amino Acid Position:
206

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
0.9
74
38.4
Major BPS
53.2
0.08
1.3
63.4
42.8
Major PPT
82.3
0.73
0.8
77.1
37.1
Minor 5ss
34.1
-1.8
3.2
46.7
48.6
Minor BPS
48.6
-0
3.5
82.48
39.6

Associated Gene:

Gene:
PLPP4
Ensembl Gene ID:
ENSAPLG00000011003
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011454
31355902 - 31413583
57682