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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_31445750_31453800_F

Intron Information:

Intron Rank:
147333
Intron Class:
major
Intron Phase:
Intron Coordinates:
31445750 - 31453800
Intron Length:
8051

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGTGT
5'SS Class:
major
3'SS Sequence:
ATTTTTAAAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTCTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.1
0.5
1.1
63.9
42.9
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
71.8
0.49
1
68.1
40.9
Minor 5ss
36.7
-1.5
3.6
56
48.2
Minor BPS
75.8
0.89
1.5
91.23
32.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029357
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027684
31445212 - 31461962
16751