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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_31479932_31502937_F

Intron Information:

Intron Rank:
134574
Intron Class:
major
Intron Phase:
Intron Coordinates:
31479932 - 31502937
Intron Length:
23006

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
ATTCTCATTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTCTCATTATAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
1
79.7
29
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
76.6
0.6
0.8
70.5
34.2
Minor 5ss
42.9
-0.8
2.7
55.2
42.1
Minor BPS
49.6
-0.1
2
61.88
45.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022339
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036150
31479708 - 31503188
23481