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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_31525375_31526334_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
31525375 - 31526334
Intron Length:
960

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAGGGGGC
5'SS Class:
major
3'SS Sequence:
TGTGCTTTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTGAT
U12 Branch Point Sequence:
GCTTGTTTGATG
Flanking Amino Acid:
LSAPNRGAADWGWQGLIAYG
Intron Amino Acid Position:
29

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.2
0.48
1.1
59.8
39
Major BPS
78.6
0.71
1.2
71.4
45.1
Major PPT
77.7
0.62
0.9
69.7
41.5
Minor 5ss
28.3
-2.5
3.7
37.4
42.8
Minor BPS
49.2
-0.2
1.8
54.17
41.9

Associated Gene:

Gene:
WDR11
Ensembl Gene ID:
ENSAPLG00000011124
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011631
31525289 - 31567200
41912