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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_31529465_31533458_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
31529465 - 31533458
Intron Length:
3994

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGATA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTGACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TTTCTTTTGACA
Flanking Amino Acid:
EIQEHAKPIQDMQWLWNQDA
Intron Amino Acid Position:
118

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
1
80.6
33.4
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
85.5
0.8
0.9
83.5
31.6
Minor 5ss
35.9
-1.6
3.2
48.7
47.1
Minor BPS
71.5
0.67
1.1
79.17
30

Associated Gene:

Gene:
WDR11
Ensembl Gene ID:
ENSAPLG00000011124
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011631
31525289 - 31567200
41912