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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_31535150_31537222_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
31535150 - 31537222
Intron Length:
2073

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTTGC
5'SS Class:
strong_major
3'SS Sequence:
TGACATTTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TATTTTTTGACA
Flanking Amino Acid:
VKILISNEKPSAESVTLNDC
Intron Amino Acid Position:
237

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
1
73.2
39.3
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
75.9
0.58
1
69.3
41.2
Minor 5ss
39.2
-1.2
3.1
52.5
44.7
Minor BPS
74
0.75
1.1
78.4
31.4

Associated Gene:

Gene:
WDR11
Ensembl Gene ID:
ENSAPLG00000011124
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011631
31525289 - 31567200
41912